VISDB Viral Integration Site DataBase

VIS ID

TVIS10012362

Fusion event

HBV-TBC1D2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

2602

Orient

+

Integrated sequence

TACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCA| |CTCACAGTTAATGAGAAAAGAAGATTGCAATTGATTATGCCTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTT

Chromosome

chr9

Cytoband

q22.33

Reference genome

Start

End

100999214/98236932 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-17-5p

Nearest miRNA

hsa-let-7a-1/Upstream/7715; hsa-mir-12126/Downstream/8363996;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/44049, chr9-CpG: 96/Downstream/18168

Upstream sequence

aacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggatacccaggaattgaactcagctctgcaccaagcagacctaatagaca

Downstream sequence

TTTTTTTTTTCCTCATTCAAAATACTTTTCATGGGGTTGGGAATTGATTATTTCTCCAAAGCTTTTATGAATTTAAAGCATGCCAGTTAAGATAATAAAA