Basic Information
VIS ID
TVIS10012433
Fusion event
HBV-chr7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2742
Orient
+
Integrated sequence
CTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTAG| |ACACTATTTACACACTCTATGGAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGAT
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
155425954/155633260 (Hg38)
End
155425954/155633260 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/4199621; hsa-mir-153-2/Downstream/1941076;
Nearest TSS
ENST00000635602/Upstream/77810; ENST00000287912/Downstream/11117;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/59285, chr7-CpG: 76/Downstream/11091
Nearby gene
CNPY1(-99415) ; RBM33(+11249) ;
Upstream sequence
gtttctcccttttgaccaatgaaatcacctgagacagaggtgGCACTAGAAATCACGTCTTTATTCTAAGTCCAGGACTCTTTGTAACCCCATCTTGCTG
Downstream sequence
ttatgtcttcttggataatcagcccctttatcttgtctctgtttattcctgataatattacttgttttgaagtctactttgtcccatattgtagacactc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate