VISDB Viral Integration Site DataBase

VIS ID

TVIS10012438

Fusion event

HBV-PLA2G4A integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

234

Orient

+

Integrated sequence

GATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTC| |ACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATC

Chromosome

chr1

Cytoband

q31.1

Reference genome

Start

End

186940136/186971004 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-30a-5p ; hsa-mir-146b-5p ; hsa-mir-10a-5p ; hsa-mir-449c-5p ; hsa-mir-7977 ; hsa-mir-3157-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4755-3p ; hsa-mir-342-3p ; hsa-mir-4691-3p ; hsa-mir-1228-3p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-7160-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-5690 ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-6783-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-2115-3p ; hsa-mir-4310 ; hsa-mir-4711-5p ; hsa-mir-4738-3p ; hsa-mir-548av-3p ; hsa-mir-7157-5p

Nearest miRNA

hsa-mir-101-1/Upstream/6532614; hsa-mir-1182/Downstream/5745324;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/290055, chr1-CpG: 56/Downstream/5837498

Upstream sequence

catataaattttaggattttttttttctatttctgtaaagaatgtcactggtattttgatagggattgcattggatctgtagattgctttgggtagtatA

Downstream sequence

TTCTTGAAATTCATTCTTACCAACATCAGTTAAATGTGGATTGatattttaatttttattttattcttctaaatatatttaaCTCATTAATCTTTTTGAA