Basic Information
VIS ID
TVIS10012456
Fusion event
HBV-chr10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1769
Orient
-
Integrated sequence
GGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCT| |TTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAA
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42598063/42102615 (Hg38)
End
42598063/42102615 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/6461363; hsa-mir-107/Downstream/894948;
Nearest TSS
ENST00000439456/Upstream/3649434; ENST00000442306/Downstream/82724;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/3159509, chr10-CpG: 184/Downstream/8418
Nearby gene
LOC441666(+229251) ;
Upstream sequence
aatgtaatcaaaagtaatcatcatccaatggaatcagaaataaccatcatcaattggtattgaatggaattgtcatcaaatggaattcaaaggaatcatc
Downstream sequence
atcaaatggaaccgaatggaatcctcattgaatggaaatgaaaggagtcatcatctaatggaatcgcatggaatcatcatcaaatgaaatcgaatggaat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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