VISDB Viral Integration Site DataBase

VIS ID

TVIS10012539

Fusion event

HBV-SOAT1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1791

Orient

-

Integrated sequence

CCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCA| |TAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGT

Chromosome

chr1

Cytoband

q25.2

Reference genome

Start

End

179303110/179333975 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-mir-1303 ; hsa-mir-500a-3p ; hsa-mir-186-5p ; hsa-mir-4684-5p ; hsa-mir-3675-3p ; hsa-mir-2681-3p ; hsa-mir-6771-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-3664-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-122-3p ; hsa-mir-1321 ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4682 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-6753-5p ; hsa-mir-6754-5p ; hsa-mir-7113-5p ; hsa-mir-8077

Nearest miRNA

hsa-mir-101-1/Upstream/656141; hsa-mir-1182/Downstream/469949;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/39789, chr1-CpG: 47/Downstream/31684

Upstream sequence

CAAGTGGTGAAAGCAGCTAGCTGAATAATATTCAGGACTGTCAACCAAATGGGAGGTCAGAAGCTCACCCAGTCGGCTGCAACCATGGCGGAGCCAGAGG

Downstream sequence

GGCTCAAGGGGCCTGTGCTATACCAAGGCTGCAGTTCCTTGCAATGCTCTAGATGACCCTGGGCAGTCTATTCTTGAGCCCCTTCATAGTCGCTGTGATt