VISDB Viral Integration Site DataBase

VIS ID

TVIS10012545

Fusion event

HBV-CACNB2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|Polymerase|

Start

2419

Orient

+

Integrated sequence

CTATCAACACTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTC| |GCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTA

Chromosome

chr10

Cytoband

p12.33

Reference genome

Start

End

18474249/18185320 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3653-5p ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6865-3p ; hsa-mir-4260 ; hsa-mir-5572 ; hsa-mir-450a-2-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-2110 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-4450 ; hsa-mir-2052 ; hsa-mir-186-3p ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-208a-3p ; hsa-mir-208b-3p

Nearest miRNA

hsa-mir-1265/Upstream/340127; hsa-mir-107/Downstream/2366650;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/44029, chr10-CpG: 24/Downstream/466279

Upstream sequence

AAAAattgagatatcattcataaaccttaaaattcacctttttaaagtatacaGCAAACAAAATTTAAAAAGTTTGTTGGTAGCTTGATTCTGTTCAACC

Downstream sequence

TAAAATTTATTAACAGAATCAGATGAGTTAAATTGTATACAGAGTATTTCCAGATAGGAAATGTGTTATTTAAATTCCATTTATCTGGTGAGCTCAGATG