Basic Information
VIS ID
TVIS10012547
Fusion event
HBV-LOC107984191 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2630
Orient
+
Integrated sequence
AAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAAGAAGATTGC| |AATTGATTATGCCTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTA
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
313210/267270 (Hg38)
End
313210/267270 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984191
Nearest miRNA
hsa-mir-107/Downstream/374419;
Nearest TSS
ENST00000439456/Upstream/22799; ENST00000425723/Downstream/62256;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/130758, chr10-CpG: 32/Downstream/33294
Nearby gene
ZMYND11(-12633) ; DIP2C(+6920) ;
Upstream sequence
gtgatgccaccaagggacactttctgggaaaatctgaccagattacagcatgttgactctttggtgccgcaatcccacttctggaaatctgtccatcaga
Downstream sequence
tacgcttggccaattatgaaatacactgttatcataacaaaaattgatgactcataatagcagaagacaggaaaaaggctaagtgcccattaatagggac
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate