Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10012589
Fusion event
HBV-BAIAP2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1774
Orient
-
Integrated sequence
CTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTA| |CTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTC
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
Start
End
79009201/81035401 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10226/Upstream/615908; hsa-mir-1250/Downstream/89875;
Nearest CpG islands
chr17-CpG: 181/Target, None/Upstream, None/Downstream
Upstream sequence
CTATAAGGTGAGCGCCCCCCGGCGCCGAGCTGAGCCCGCTCCGTGTGCGCCTGGGTcgcgcgccgcccgcgcgcccgagcccgaccagggcggccccggg
Downstream sequence
gccgcgcgccgggccAGGAGGCTGGGACTTTGGGGGTCTTCCCGGCGCGGCCACCCGGGACCCGGGCTGCTGGGGTGGTGAGCCCGGCGCCGGCCGCTCA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.