Basic Information
VIS ID
TVIS10012610
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
454
Orient
-
Integrated sequence
CCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACT| |ATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTAT
Host Sequence
Chromosome
chr3
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
154299529/154581740 (Hg38)
End
154299529/154581740 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/3015745; hsa-mir-1224/Downstream/4700906;
Nearest TSS
ENST00000440867/Upstream/42431; ENST00000497890/Downstream/279277;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/152564, chr3-CpG: 60/Downstream/497869
Nearby gene
GPR149(-152025) ; MME(+497907) ;
Nearest cancer related gene
MME(TSG, +497907) ;
Upstream sequence
aagaccagagtggcaagtactgagtgaacaacagggaaaatgaagggaatgagattagagttcaccaaggttcagatcttctagaggcctggaagctata
Downstream sequence
caatgtcttggagattttccccaatgttttcttgtagtggtttcatagtttgaggtcttagacttaagtctttaacccgttttgatttgatttttgtaca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate