VISDB Viral Integration Site DataBase

VIS ID

TVIS10012616

Fusion event

HBV-RGS12 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

965

Orient

-

Integrated sequence

CTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAATGTTTTAGAAAACTTCCTATT| |AACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATGCCTTTGT

Chromosome

chr4

Cytoband

p16.3

Reference genome

Start

End

3419055/3417328 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-149-5p ; hsa-mir-138-5p ; hsa-mir-7704 ; hsa-mir-4532 ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459

Nearest miRNA

hsa-mir-4800/Upstream/1167172; hsa-mir-12113/Downstream/2505947;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/3702, chr4-CpG: 24/Downstream/30595

Upstream sequence

gtttccatgtagttgagcggttttgagtgagtttcttaatcctgagttctagtttgattgcactgtggtctgagagacagtttgttataatttctgttct

Downstream sequence

TTAACGTAATAGTAAAATAACTTCACATTGTTTTAACCAAGGTTTCCATTTGATGACAGTTAAGTGGAAAATCAAAATCCGGCCGATCCCTGAATGAAGA