hsa-mir-4766-5p _LIHC.png
SOX5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10012676
Fusion event
HBV-SOX5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1811
Orient
-
Integrated sequence
AAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAG| |CACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATC
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
End
24072508/23919574 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1244-3/Upstream/6246180; hsa-let-7i/Downstream/292847;
Upstream sequence
CATCTAAATGTGGTAATAAAATGCAGCTAATACTTATATAGCAACTAAGATATCACACTGAGCTATATGTCCATATCTGGCTATCTACTTAtttacctgc
Downstream sequence
ctacctatcaaatctttacaaccaccatgccagtgagtactattcctatctctactttacggccaaggaagccaaggaatggaggtcaggagatgccaag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate