VISDB Viral Integration Site DataBase

VIS ID

TVIS10012706

Fusion event

HBV-SLC2A4RG integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1826

Orient

-

Integrated sequence

AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTT| |TCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAA

Chromosome

chr20

Cytoband

q13.33

Reference genome

Start

End

62372329/63740976 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-744-5p ; hsa-mir-3127-5p ; hsa-mir-7108-3p ; hsa-mir-6823-5p ; hsa-mir-4690-3p ; hsa-mir-5685 ; hsa-mir-1178-5p ; hsa-mir-149-3p ; hsa-mir-1908-5p ; hsa-mir-4723-5p ; hsa-mir-4728-5p ; hsa-mir-5698 ; hsa-mir-663a ; hsa-mir-6785-5p ; hsa-mir-6787-5p ; hsa-mir-6795-5p ; hsa-mir-6825-5p ; hsa-mir-6870-5p ; hsa-mir-6883-5p ; hsa-mir-6887-5p ; hsa-mir-7111-5p

Nearest miRNA

hsa-mir-1-1/Upstream/454110; hsa-mir-1914/Downstream/178473;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/367, chr20-CpG: 23/Downstream/1732

Upstream sequence

CTGGCTGCCAGGGCAGGGGCGGGCCCTGGCCTGGCTCGCTGGGGCCTGGGGAGCTGCCCGTGCTTCCAGCCCAGTCTCCCCCTGGCTGCTGCCGGCTGCT

Downstream sequence

GGCCACTCCCACCTCCCAGGCCTGGCGTGAGGCCCACAGCTGCTGTTGCACAACCCTGGTTAATGTGTGATGGGGGGAGGCCTGGGCCTGGCCCGCCCCT