Basic Information
VIS ID
TVIS10012709
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1838
Orient
+
Integrated sequence
GAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCT| |AATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACT
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
165327913/165610125 (Hg38)
End
165327913/165610125 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1438569; hsa-mir-1224/Downstream/2941729;
Nearest TSS
ENST00000440867/Upstream/61287; ENST00000498413/Downstream/227295;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1605618, chr3-CpG: 23/Downstream/1770014
Nearby gene
SLITRK3(-413444) ; BCHE(+162779) ;
Upstream sequence
caggttgttcagtttccatgtagttgagcggctttgagtgagattcttaatcctgagttctagtttgattgcactgtggtctgagagatagtttgttata
Downstream sequence
ctgaattaaatgtaGTAACAATCAAATACAAATTTAGTTAGACTAGTTTAAAAAACAATAAAAAACTGCAGATGAAATATATAgaaagacatagaaaaat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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