Basic Information
VIS ID
TVIS10012724
Fusion event
HBV-chr6 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1820
Orient
+
Integrated sequence
TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTAT
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
98339038/97891162 (Hg38)
End
98339038/97891162 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/6369425; hsa-mir-1202/Downstream/133369;
Nearest TSS
ENST00000381078/Upstream/5661; ENST00000607032/Downstream/47627;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/607839, chr6-CpG: 50/Downstream/933356
Nearby gene
MIR548H3(-476755) ; MIR2113(+133369) ;
Upstream sequence
GTTTGTGACTGGAGTGCTACCTGAGTAAATTATCATGATTACATGAAAAGCAATTAAGAGAAGAAGGTCAAAGGACCAACCTCTAATCACTAAGTTTGGT
Downstream sequence
CTATTTGGTTTAGCTTTTTGAAGTGTATGTGATTATGACCTGAAAGGCAGATTAATAGCAGGATTATGGTCTTATAGATCATACAATTCATTATGTTCTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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