Basic Information
VIS ID
TVIS10012729
Fusion event
HBV-chr7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1741
Orient
+
Integrated sequence
GCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAG| |TTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAAT
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
End
155803734/156011040 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-10399/Upstream/4577401; hsa-mir-153-2/Downstream/1563296;
Nearby gene
SHH(-198767) ; LOC285889(+426749) ;
Upstream sequence
ATGTTGGAGAAGTTCCTTCTGTTACTGGGTAAGCTGAGTGTTAGCAACTCCTGGCTGTTGAAGGGCAACATGGATGATGCTTTCGCCTGTCACTAGACAG
Downstream sequence
tgcctaggtatttttttaattttttacttatttttttagtagagatggggtttctccatgttggtcaggctggtctcaaactcccgacttcaggtgatcc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate