Basic Information
VIS ID
TVIS10012734
Fusion event
HBV-LOC102723694 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1819
Orient
-
Integrated sequence
TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
135819599/134807356 (Hg38)
End
135819599/134807356 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102723694
Nearest miRNA
hsa-mir-1204/Upstream/2411; hsa-mir-10400/Downstream/5925208;
Nearest TSS
ENST00000518652/Upstream/9084; ENST00000521444/Downstream/25391;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/94144, chr8-CpG: 133/Downstream/24099
Nearby gene
MIR30D(-2411) ; LINC01591(+426775) ;
Upstream sequence
tagccagaagcatgctaagaaacatcttagggatgtttacattcaagtcacagagttgaacattccctttcacagagcaggtttgaaacaatcttctcgt
Downstream sequence
TGGGTTTATAAAATTTTACCAGAATACATAAGAAAACAATTAACAGGAAACAACATTTTGTAACTTAAGATAAATATTCTGGAAAAAAAACCCTCAAATG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate