Basic Information
VIS ID
TVIS10012737
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1811
Orient
-
Integrated sequence
AAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAG| |CACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATC
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
55545501/54632941 (Hg38)
End
55545501/54632941 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/11736666; hsa-mir-10400/Downstream/7081847;
Nearest TSS
ENST00000518652/Upstream/16874; ENST00000522559/Downstream/469448;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/11468, chr8-CpG: 222/Downstream/468155
Nearby gene
RP1(-2107) ; XKR4(+469516) ;
Upstream sequence
agccagaagcattctaagaaacatcttagggatgtgtacattcaagtcacagagttgaacattcccctttctcagagcaggtttgaaacaatcttctcgt
Downstream sequence
AGAATTCAGTCTCTGGTCCCAAGGTGGAGTGGTGAAATTATTGTGTTTTGCCCACCAGATGGCAGCTGTGCTATGCGCTGCCAAAAGTTCAGGCACTCTG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate