VISDB Viral Integration Site DataBase

VIS ID

TVIS10012810

Fusion event

HBV-SLC26A3 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

2763

Orient

+

Integrated sequence

TTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTAGACACTATTTACACACTCTATG| |GAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGGGCAGAATCT

Chromosome

chr7

Cytoband

q22.3

Reference genome

Start

End

107410616/107770171 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-7-5p ; hsa-mir-494-3p

Nearest miRNA

hsa-mir-10525/Upstream/5298640; hsa-mir-10399/Downstream/6883174;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/25595, chr7-CpG: 51/Downstream/120864

Upstream sequence

tgcaatggaaacaaagtaaaattgtaataacacttaaacagcatcaaataaaacatcaaatatcaaggaataaatttaatgagatgtgcaacacatttac

Downstream sequence

ttttttttttAAAAAAAAAAAGGGGtttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttga