VISDB Viral Integration Site DataBase

VIS ID

TVIS10012836

Fusion event

HBV-HFM1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|large S protein|

Start

2880

Orient

+

Integrated sequence

ATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTC| |TGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGC

Chromosome

chr1

Cytoband

p22.2

Reference genome

Start

End

91834877/91369320 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-218-5p ; hsa-mir-2681-5p ; hsa-mir-4724-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-551b-5p

Nearest miRNA

hsa-mir-101-1/Upstream/5011633; hsa-mir-11399/Downstream/2477512;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/347070, chr1-CpG: 62/Downstream/34999

Upstream sequence

actgaactcagcactgcaccaaccagacctaatagacatctacagaactctccaccccaaataaacagaatatacattcttttcagcaccacaccacacc

Downstream sequence

tattccaaaattgaccacatagttggaagtaaagcactcctcagcaaatgtaaaagaacagaaattataacaaactgtctctcagaccacagtgcaatca