CNTN5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10012859
Fusion event
HBV-CNTN5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
2934
Orient
+
Integrated sequence
AACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAA| |ATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCTGGGTTTCACCCCACCGCACGGAGG
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99909177/100038445 (Hg38)
End
99909177/100038445 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNTN5
Nearest miRNA
hsa-mir-10392/Upstream/3696919; hsa-let-7a-2/Downstream/1481375;
Nearest TSS
ENST00000527297/Upstream/81639; ENST00000527682/Downstream/31956;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1017354, chr11-CpG: 64/Downstream/648747
Upstream sequence
tttctgttcttttacatttgctgaggagtgctttacttccaactatgtggtcaattttggaataggtgtggtgtggtgttgaaaagaatgtatattctgt
Downstream sequence
tgatttggggtggagagttctgtaaatgtctgttaggtctgcttggtgcagagctgagttcaattgctgggtatccttgttaactttctgtcttgttgat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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