Basic Information
VIS ID
TVIS10012910
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1900
Orient
+
Integrated sequence
CTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGG| |GCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATAC
Host Sequence
Chromosome
chr2
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
92324079/92136053 (Hg38)
End
92324079/92136053 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/3323599; hsa-mir-10b/Downstream/4662225;
Nearest TSS
ENST00000437798/Upstream/318282; ENST00000561882/Downstream/2452469;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/61016, chr2-CpG: 119/Downstream/2136780
Nearby gene
ACTR3BP2(-193583) ;
Upstream sequence
ccacaactaacagtgttgaagctttcttttgatagagtagttttgaaacactctttttgtaaaatttgcaagaggatatttggatagctttgaggatttc
Downstream sequence
gttggaaacgggattgtcttcatataaactctagacagaagcattctcagaagcttcattgggatgtttcaattgaagtcacagtgttgaacagtccctt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate