Basic Information
VIS ID
TVIS10012939
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1836
Orient
+
Integrated sequence
AGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGC| |CTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTA
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
59148535/58282369 (Hg38)
End
59148535/58282369 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4B
Nearest miRNA
hsa-mir-12113/Upstream/5569622; hsa-mir-1243/Downstream/2640250;
Nearest TSS
ENST00000502981/Upstream/562334; ENST00000513836/Downstream/253959;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1086420, chr4-CpG: 222/Downstream/2917796
Nearby gene
IGFBP7-AS1(-1077070) ;
Upstream sequence
tggaaggggtcaggggcagaatgatatagtttggttgtgtccccacccaaatcccaccttgaattgtattaatctccacttttcaagcgtggagtcaggt
Downstream sequence
gagataattgaatcatggagatagtttcccccatgctgttctcgtagtagtgaataagactcactagatctgatggctttataaatgggagttcctgtgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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