VISDB Viral Integration Site DataBase

VIS ID

TVIS10012969

Fusion event

HBV-NCALD integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

2473

Orient

-

Integrated sequence

AGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAG| |GTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTA

Chromosome

chr8

Cytoband

q22.3

Reference genome

Start

End

103093816/102081588 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-2053 ; hsa-mir-6780a-3p ; hsa-mir-4775 ; hsa-mir-569 ; hsa-mir-4635 ; hsa-mir-32-3p ; hsa-mir-203a-3p

Nearest miRNA

hsa-mir-12123/Upstream/1378564; hsa-mir-10400/Downstream/43844;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/587386, chr8-CpG: 81/Downstream/42098

Upstream sequence

tagccagacgcattctaagaaacatcttagggaggtttacattcaagtcacagagttgaacattccctttcacagagcaggtttgaaacaatcttctcgt

Downstream sequence

CTGGCTTTGCGCATGCGCACTTTACCTCTTCCGAACTCTGCAATTCTCCCATTAGTTCAGTCCATCAGCCTGCGGACTTAAGCCAGACATCGTGCTGACA