Basic Information
VIS ID
TVIS10012994
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2478
Orient
+
Integrated sequence
AACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGG| |GAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAA
Host Sequence
Chromosome
chr8
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
46850244/45938622 (Hg38)
End
46850244/45938622 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/3042347; hsa-mir-10400/Downstream/15776166;
Nearest TSS
ENST00000518652/Upstream/2742454; ENST00000518278/Downstream/883615;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2661287, chr8-CpG: 41/Downstream/678745
Nearby gene
LINC00293(+902264) ;
Upstream sequence
agccagaagcattctaagaaacatcttagggatgtgtacattcaagtcacagagttgaacattcccctttctcagagcaggtttgaaacaatcttctcgt
Downstream sequence
actatctggaagtggacattttgagctccttggggcctatgctgaaaaaggaaatatcttccgacaaaaactagacagaagcattcgcagaatcacgttt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate