Basic Information
VIS ID
TVIS10013029
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|Polymerase|
Start
1605
Orient
-
Integrated sequence
CCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACG| |TCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCA
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
120922349/143888370 (Hg38)
End
120922349/143888370 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1F
Nearest miRNA
hsa-mir-101-1/Upstream/26793642; hsa-mir-1182/Downstream/1962217;
Nearest TSS
ENST00000473358/Upstream/3294; ENST00000444624/Downstream/17117;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2881, chr1-CpG: 42/Downstream/15879
Nearby gene
HIST2H2BA(-7507) ; FCGR1B(+3779) ;
Upstream sequence
CTTCTTCAAAATTATCTTCTCAGAGAATACCATATTTGGGGAATTTAATTTACTTCTCGAGAATCCCTAACCCAATTATTTCTAGTCTTCCTTAGAGATT
Downstream sequence
TTCTTTCTCCATTAACTCCCATATTATGTCTGGGAATCTTTTACTTTCACATATGCTCCCTCTCCACAATTTATTCTTTTTTTATCTTCTTTAAGTGTTA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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