Basic Information
VIS ID
TVIS10013049
Fusion event
HBV-chr10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|middle S protein|
Start
93
Orient
+
Integrated sequence
AATTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCT| |GTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTC
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
GRCh37/hg19
Start
95708883/93949126 (Hg38)
End
95708883/93949126 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-107/Upstream/4356299; hsa-mir-1287/Downstream/2115189;
Nearest TSS
ENST00000439456/Upstream/55104; ENST00000371375/Downstream/81686;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/54702, chr10-CpG: 88/Downstream/44464
Nearby gene
SLC35G1(-46392) ; PIPSL(+9014) ;
Upstream sequence
cttctttcccttgatacaatgtttctgttgttttgtgaatcacactagttcatgtacactgtgtgaactagtagttcattcccattataaataaagctgc
Downstream sequence
tatgaacgttctttataccagtatttttgtggacatactcttattcctcttgggtgcagcaaggttttcactgtgtgtgtgtgtgtgtgtcaaataatat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate