SORL1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10013050
Fusion event
HBV-SORL1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
332
Orient
+
Integrated sequence
TCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAA| |TCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATC
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
121439970/121569261 (Hg38)
End
121439970/121569261 (Hg38)
Orient
+
Location type
Intronic
Target gene
SORL1
miRNAs that regulate target gene
hsa-mir-127-5p ; hsa-mir-1229-3p
Nearest miRNA
hsa-mir-10392/Upstream/2256249; hsa-let-7a-2/Downstream/530496;
Nearest TSS
ENST00000527297/Upstream/2536; ENST00000534754/Downstream/7499;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/116668, chr11-CpG: 113/Downstream/1086309
Upstream sequence
tatgcctgtctttactttaatctcttaatcccgtcatcttcgtaagctgaggaggatgtatgtcgcctcaggaccctgtgatgattgcattaactgcaca
Downstream sequence
aattgtagagcatgtgtgtttgaacaatatgaaatctgggcaccttgaaaaaagaacaggataacagcaatgttcagggaacaagacagataaccttaaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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