Basic Information
VIS ID
TVIS10013052
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1269
Orient
-
Integrated sequence
GGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTTCGGCTCCTCTGCCGATCC| |ATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATC
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
128276450/128406555 (Hg38)
End
128276450/128406555 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/1418013; hsa-mir-4697/Downstream/115835;
Nearest TSS
ENST00000527297/Upstream/195118; ENST00000525706/Downstream/57395;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1402641, chr11-CpG: 20/Downstream/45211
Nearby gene
KIRREL3-AS3(-1400497) ; ETS1(+52206) ;
Nearest cancer related gene
ETS1(OG, +52206) ;
Upstream sequence
GTTAGGACCCATCTGAGATTCCAGAAACCTCTGCTGAGTCAGGTGGAGATTGAGCTGAGTCTTAAGAAGCAAGAGTTCTGAGACTCTGCCACTTCTGCCC
Downstream sequence
CAGGGAAGATGCAAACTGCTGACCTGCCCAGGATGGATGTCCCTGGGAAGGAAGTCTCTGGTGTCAGTCTGGAATGCCAGCCAGGAATTTGGGCAACAAG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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