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VISDB
Viral Integration Site DataBase
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TVIS10013056
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10013056
Fusion event
HBV-MLXIP integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1769
Orient
-
Integrated sequence
GGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCT| |TTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAA
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
122609794/122125247 (Hg38)
End
122609794/122125247 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
MLXIP
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-98-5p
;
hsa-mir-26b-5p
;
hsa-mir-877-5p
;
hsa-mir-421
;
hsa-mir-20a-5p
;
hsa-mir-106b-5p
;
hsa-mir-6858-5p
;
hsa-mir-4689
;
hsa-mir-4710
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-4763-3p
;
hsa-mir-149-3p
;
hsa-mir-1207-5p
;
hsa-mir-6077
;
hsa-mir-6799-3p
;
hsa-mir-3173-5p
;
hsa-mir-4722-5p
;
hsa-mir-1286
;
hsa-mir-873-5p
;
hsa-mir-6804-5p
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-4784
;
hsa-mir-1827
;
hsa-mir-4756-5p
;
hsa-mir-3150b-3p
;
hsa-mir-4739
;
hsa-mir-1321
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-6873-5p
;
hsa-mir-6856-5p
;
hsa-mir-6758-5p
;
hsa-mir-6816-3p
;
hsa-mir-3941
;
hsa-mir-5689
;
hsa-mir-8064
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-8485
;
hsa-mir-4298
;
hsa-mir-1302
;
hsa-mir-561-5p
;
hsa-mir-216b-3p
;
hsa-mir-3922-5p
;
hsa-mir-603
;
hsa-mir-5581-5p
;
hsa-mir-4297
;
hsa-mir-5695
;
hsa-mir-662
;
hsa-mir-3614-3p
;
hsa-mir-483-5p
;
hsa-mir-6801-5p
;
hsa-mir-1914-5p
;
hsa-mir-4793-5p
;
hsa-mir-383-3p
;
hsa-mir-3065-3p
;
hsa-mir-6871-3p
;
hsa-mir-377-3p
;
hsa-mir-4284
;
hsa-mir-342-3p
;
hsa-mir-4714-3p
;
hsa-mir-30e-5p
;
hsa-mir-30d-5p
;
hsa-mir-30c-5p
;
hsa-mir-30b-5p
;
hsa-mir-30a-5p
;
hsa-mir-519d-3p
;
hsa-mir-93-5p
;
hsa-mir-20b-5p
;
hsa-mir-17-5p
;
hsa-mir-195-5p
;
hsa-mir-16-5p
;
hsa-mir-15a-5p
;
hsa-mir-15b-5p
;
hsa-mir-122-5p
;
hsa-mir-1299
;
hsa-mir-1304-3p
;
hsa-mir-140-3p
;
hsa-mir-143-5p
;
hsa-mir-150-3p
;
hsa-mir-216a-5p
;
hsa-mir-3135b
;
hsa-mir-3652
;
hsa-mir-4430
;
hsa-mir-4476
;
hsa-mir-500b-3p
;
hsa-mir-504-3p
;
hsa-mir-5698
;
hsa-mir-6128
;
hsa-mir-6499-3p
;
hsa-mir-6736-3p
;
hsa-mir-6787-3p
;
hsa-mir-6802-3p
;
hsa-mir-6876-5p
;
hsa-mir-6890-3p
;
hsa-mir-875-3p
;
hsa-mir-1182
;
hsa-mir-129-5p
;
hsa-mir-193a-5p
;
hsa-mir-3674
;
hsa-mir-4524a-3p
;
hsa-mir-4524b-3p
;
hsa-mir-4732-5p
;
hsa-mir-6832-5p
Nearest miRNA
hsa-let-7i/Upstream/680895; hsa-mir-3612/Downstream/570660;
Nearest TSS
ENST00000382841/Upstream/46525;
ENST00000535876/Downstream/2633;
Nearest CpG islands
None/Target,
chr12-CpG: 104/Upstream/788
,
chr12-CpG: 41/Downstream/57854
Upstream sequence
aagagcgaaactccatctccaaaaacaaacaaaaatttggctgatgtggtggtgggcacctgtagtcccagctactcggttggctgaggcggcagaatcg
Downstream sequence
cttgaagccaggaggcggaagttgcagtgagccaagatctcgccactgcactccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Sample Information
×
Sample name
812P
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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