Basic Information
VIS ID
TVIS10013061
Fusion event
HBV-chr12 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
332
Orient
+
Integrated sequence
TCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAA| |TCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATC
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
30375199/30222266 (Hg38)
End
30375199/30222266 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/4348187; hsa-let-7i/Downstream/12101434;
Nearest TSS
ENST00000382841/Upstream/21283; ENST00000546558/Downstream/74398;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/20587, chr12-CpG: 68/Downstream/473064
Nearby gene
TMTC1(-437507) ; IPO8(+406716) ;
Upstream sequence
ctatgcctgtctttacttgaatctcttaatcctgtcatctcataaactgaggaggatgtatgtcgcctcaggaccctgtgatgattgcattaactgcaca
Downstream sequence
aattgtagagcatgtgtgtttgaacagtatgaaatctgggcaccttgaaaaaagaacaagataacagcaatattcagggaagaagagagataaccttaaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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