Basic Information
VIS ID
TVIS10013067
Fusion event
HBV-chr13 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1969
Orient
-
Integrated sequence
GCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACT| |TCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAG
Host Sequence
Chromosome
chr13
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
90317029/89664775 (Hg38)
End
90317029/89664775 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/2046035; hsa-mir-1267/Downstream/566407;
Nearest TSS
ENST00000623511/Upstream/110971; ENST00000426840/Downstream/454944;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/301254, chr13-CpG: 49/Downstream/1510220
Nearby gene
LINC00353(-100362) ; LINC00559(+395472) ;
Upstream sequence
aagtgggggtgagaggtgaagccagctggacttcctgggtcgactggggacttggagaacttttctgtctagctagaggattgtaaatgcaccaatcagc
Downstream sequence
actctgtaaaaacgcaccaatcgacactgtgtctagctaaaggtctgtaaatacaccaatcagcactctgtaaaaactcagcaatcagcgctctgtgtct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate