VISDB Viral Integration Site DataBase

VIS ID

TVIS10013069

Fusion event

HBV-ANKRD29 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

233

Orient

-

Integrated sequence

GGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCT| |CACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAAT

Chromosome

chr18

Cytoband

q11.2

Reference genome

Start

End

21241730/23661766 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-335-5p ; hsa-mir-340-5p ; hsa-mir-130b-3p ; hsa-mir-132-3p ; hsa-mir-93-5p ; hsa-mir-33a-5p

Nearest miRNA

hsa-mir-1-2/Upstream/728328; hsa-mir-122/Downstream/659909;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/41932, chr18-CpG: 59/Downstream/636

Upstream sequence

ccattgcactccagcctgggcaacaagagcaaaactccgtctcaggaaaaaaaaCTTTAAAGTCATTCACATTCGTCTGCTTCGTTCCATTCTCACCACC

Downstream sequence

TATGCACTGGTCCAGTACCATTTCTTAAAAAGATGACAACATCTTCCAGCTCCAACCCTCTTCTCCAAACCTAGCCAGAGATCTTTGCAACATGCACATC