Basic Information
VIS ID
TVIS10013094
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|middle S protein|
Start
41
Orient
-
Integrated sequence
AATTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGAGT| |GAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGG
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
74183510/74134359 (Hg38)
End
74183510/74134359 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/2592270; hsa-mir-12124/Downstream/1080117;
Nearest TSS
ENST00000440867/Upstream/134554; ENST00000608707/Downstream/133180;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/509135, chr3-CpG: 86/Downstream/479996
Nearby gene
PDZRN3(-509438) ; CNTN3(+128212) ;
Upstream sequence
ATGGGCATTATTGACAATGTACACCATCTGGCAGCTTCCTTTTTTTGACTAATTTGTCTTGCTAACTAGGCTCAGTTATGGTCTATGCTGCTGAGGAAGT
Downstream sequence
acgatatatccataaaaattaaaaATAAAACATTTTTTTAAATGCACTGAAATTTCCTCCAGATATCTAATCTCCACCTGCCCTAAACAAATTATTCTCT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate