Basic Information
VIS ID
TVIS10013131
Fusion event
HBV-chr9 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
794
Orient
-
Integrated sequence
TTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTT| |ACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGTCATTG
Host Sequence
Chromosome
chr9
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
26771546/26771548 (Hg38)
End
26771546/26771548 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9C
Nearest miRNA
hsa-mir-101-2/Upstream/5259363; hsa-let-7a-1/Downstream/2092078;
Nearest TSS
ENST00000422679/Upstream/24595; ENST00000521572/Downstream/30185;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1092862, chr9-CpG: 69/Downstream/120742
Nearby gene
LOC100506422(-653140) ; CAAP1(+69137) ;
Upstream sequence
ttttggaataggtgtggtgtggtgttgaaaaaaatgtgtattctgttgatttggggtggagagttctgtagatgtctattatgtctgcttggtgcagagc
Downstream sequence
tcccttcttaaaatgagtaatccatttgtcaactgctgatttctttggtgtattgtccccataaacttttcataaagcatcagtgatttcaccattctgc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate