VISDB Viral Integration Site DataBase

VIS ID

TVIS10013145

Fusion event

HBV-ANKRD52 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

497

Orient

+

Integrated sequence

TCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTC| |AACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGC

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

56638886/56245102 (Hg38)

Orient

+

Location type

splicing

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-19b-3p ; hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-766-3p ; hsa-mir-92b-3p ; hsa-mir-339-5p ; hsa-mir-331-3p ; hsa-mir-320a ; hsa-mir-27b-3p ; hsa-let-7b-5p ; hsa-mir-543 ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-6762-5p ; hsa-mir-6825-5p ; hsa-mir-6845-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-3127-3p ; hsa-mir-6756-3p ; hsa-mir-493-5p ; hsa-mir-218-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-6715b-3p ; hsa-mir-296-3p ; hsa-mir-7844-5p ; hsa-mir-6821-5p ; hsa-mir-4278 ; hsa-mir-6789-5p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-6853-5p ; hsa-mir-4755-3p ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-4688 ; hsa-mir-6743-5p ; hsa-mir-4796-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-7702 ; hsa-mir-3157-3p ; hsa-mir-4279 ; hsa-mir-151a-3p ; hsa-mir-18b-3p ; hsa-mir-5009-3p ; hsa-mir-371b-3p ; hsa-mir-33a-3p ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-2682-3p ; hsa-mir-6781-3p ; hsa-mir-5088-3p ; hsa-mir-6849-3p ; hsa-mir-6819-3p ; hsa-mir-6877-3p ; hsa-mir-1233-5p ; hsa-mir-1249-5p ; hsa-mir-1321 ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-3154 ; hsa-mir-31-5p ; hsa-mir-3184-5p ; hsa-mir-3185 ; hsa-mir-3612 ; hsa-mir-3689d ; hsa-mir-3911 ; hsa-mir-423-5p ; hsa-mir-4271 ; hsa-mir-4300 ; hsa-mir-4419a ; hsa-mir-4434 ; hsa-mir-4462 ; hsa-mir-4510 ; hsa-mir-4516 ; hsa-mir-4531 ; hsa-mir-4725-3p ; hsa-mir-4728-5p ; hsa-mir-4739 ; hsa-mir-4747-5p ; hsa-mir-4756-5p ; hsa-mir-4781-5p ; hsa-mir-5196-5p ; hsa-mir-541-3p ; hsa-mir-5586-3p ; hsa-mir-5591-5p ; hsa-mir-5703 ; hsa-mir-6090 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6134 ; hsa-mir-625-5p ; hsa-mir-650 ; hsa-mir-6515-5p ; hsa-mir-654-5p ; hsa-mir-658 ; hsa-mir-6726-5p ; hsa-mir-6770-5p ; hsa-mir-6778-5p ; hsa-mir-6780b-5p ; hsa-mir-6785-5p ; hsa-mir-6797-5p ; hsa-mir-6799-5p ; hsa-mir-6827-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-6883-5p ; hsa-mir-7515 ; hsa-mir-759 ; hsa-mir-7846-3p ; hsa-mir-7847-3p ; hsa-mir-885-3p ; hsa-mir-920 ; hsa-mir-9500

Nearest miRNA

hsa-mir-1244-3/Upstream/1907788; hsa-let-7i/Downstream/949402;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/20512, chr12-CpG: 74/Downstream/12806

Upstream sequence

GAGGAGGGGTCATCAGGAAGGACAAGGGAAGTAGACTACCTGTCCTAAGCTCAAGTCATGGGCCCTCGCGAGAAGGGCTGATGCAGCAGAAGGGACTTAC

Downstream sequence

ACTGCACAGTGCAAAGGAGTGAAGGGGTTTCCTTCCAGGTACGAAAACGGGCTGTGTTCAAGTAACAACTCCAGACAATCTTCATGTCCTGGGCACGAGG