VISDB Viral Integration Site DataBase

VIS ID

TVIS10013160

Fusion event

HBV-IPCEF1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|Polymerase|

Start

1433

Orient

-

Integrated sequence

TGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTC| |CCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCT

Chromosome

chr6

Cytoband

q25.2

Reference genome

Start

End

154477153/154156018 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-let-7b-5p ; hsa-mir-521 ; hsa-mir-5006-3p ; hsa-mir-3620-5p ; hsa-mir-4755-5p ; hsa-mir-1587 ; hsa-mir-4674 ; hsa-mir-623 ; hsa-mir-664b-5p ; hsa-mir-8064 ; hsa-mir-6832-3p ; hsa-mir-216b-3p ; hsa-mir-5582-5p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-676-5p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6753-5p ; hsa-mir-34b-3p

Nearest miRNA

hsa-mir-10398/Upstream/3053242; hsa-mir-1202/Downstream/697342;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/116145, chr6-CpG: 141/Downstream/353408

Upstream sequence

AATAACTAACAAAATGGAAAATGCATAATAGCTCATTTACAGAACATTTTATATCCTGTAATTAAGGCTCTATGAATCAAATTATGCAGTGTCAGCTCTA

Downstream sequence

CTCTAACATTTGACAGCACATGCCTCAAAAAGCAAACAAAATAAACACTCTCCATTTCTTTAAATATATGTTTTTCATCCAAGGATCACACAGCACCTCC