VISDB Viral Integration Site DataBase

VIS ID

TVIS10013165

Fusion event

HBV-DPY19L1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|Polymerase|

Start

1421

Orient

-

Integrated sequence

CATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCC| |TTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCA

Chromosome

chr7

Cytoband

p14.2

Reference genome

Start

End

34985094/34945482 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-375 ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-374a-5p ; hsa-mir-155-5p ; hsa-mir-129-5p ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-4480 ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-5585-3p ; hsa-mir-582-5p ; hsa-mir-539-5p ; hsa-mir-1252-3p ; hsa-mir-3662 ; hsa-mir-548c-3p ; hsa-mir-1227-5p ; hsa-mir-4314 ; hsa-mir-5704 ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-296-5p ; hsa-mir-874-5p ; hsa-mir-4758-3p ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-1295b-3p ; hsa-mir-15a-3p ; hsa-mir-4717-5p ; hsa-mir-642a-5p ; hsa-mir-942-5p ; hsa-mir-1236-3p ; hsa-mir-4469 ; hsa-mir-6515-3p ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-1470 ; hsa-mir-4667-3p ; hsa-mir-5000-3p ; hsa-mir-4436a

Nearest miRNA

hsa-mir-1183/Upstream/4648; hsa-mir-10399/Downstream/1973875;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/866335, chr7-CpG: 203/Downstream/91042

Upstream sequence

tcacagccgaattctaccagaggtacaaggaggagctggtacatttcttctgaaactattccaatcaatagaaaaagagggaatcctccctaactcactt

Downstream sequence

GTGATGTGCTGTGTTCTGCACAGATAGGAAATAAGAAGAAATGCCAGGAAGGGAAATGACCACAATAAAAACATCAATTATCAAATATTAGGTACACAAC