Basic Information
VIS ID
TVIS10013195
Fusion event
HBV-chr10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1883
Orient
+
Integrated sequence
TGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTG| |CCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTA
Host Sequence
Chromosome
chr10
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
88512624/86752867 (Hg38)
End
88512624/86752867 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/488079; hsa-mir-107/Downstream/751014;
Nearest TSS
ENST00000439456/Upstream/34137; ENST00000480152/Downstream/3431;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/40690, chr10-CpG: 194/Downstream/2802
Nearby gene
LDB3(-16800) ; BMPR1A(+3772) ;
Nearest cancer related gene
BMPR1A(TSG, +3772) ;
Upstream sequence
GTCCTGGCAAGCTAACAGGTCAGGGTTTCAGACACAAGAGAAGGGCTGTCAGTTCTTAGAAAGGGGCGAGGCAGTGGGAGGCTGAGTCTTGAGCTTGGGA
Downstream sequence
CCAAAGCTCTGATAATTCTTCCTGCCTCAAGGCCTAGGAAAGATCAGGTTCTATGGTAAAGGGTGTACGGATAGTAGGGAAAGGAGGAATACAGAGGCCA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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