hsa-mir-891b _LIHC.png
PSMA1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10013200
Fusion event
HBV-PSMA1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|precore/core protein|
Start
1820
Orient
-
Integrated sequence
TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTAT
Host Sequence
Chromosome
chr11
Cytoband
p15.2
Reference genome
End
14645165/14623619 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-210/Upstream/2459852; hsa-let-7a-2/Downstream/1345914;
Upstream sequence
aataattgaaagattttagagaaggagttctggggtagaggtatgcaggtaaacatgaagagtttagtgtgacatattatggcccaatagaaagcatcta
Downstream sequence
ccatggaagagattgtgaacagtgaagcagatataataaccagaccagtttatataagccagtctttgttgttggctaccctgaaactgacattttggca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate