VISDB Viral Integration Site DataBase

VIS ID

TVIS10013209

Fusion event

HBV-SOX5 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

2557

Orient

+

Integrated sequence

TCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACAT| |TTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAAGAAGATTGCAATTGATTATGCCTGCCAGGTTTTATC

Chromosome

chr12

Cytoband

p12.1

Reference genome

Start

End

23758755/23605821 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-194-5p ; hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-96-5p ; hsa-mir-130a-3p ; hsa-mir-181a-5p ; hsa-mir-132-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-1231 ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4766-5p ; hsa-mir-1277-5p ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-574-5p ; hsa-mir-5580-3p ; hsa-mir-555 ; hsa-mir-374a-3p ; hsa-mir-136-3p ; hsa-mir-4704-5p ; hsa-mir-3529-3p ; hsa-mir-6759-5p ; hsa-mir-6793-5p ; hsa-mir-6748-5p ; hsa-mir-933 ; hsa-mir-4783-5p ; hsa-mir-3607-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/5932427; hsa-let-7i/Downstream/606600;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/980542, chr12-CpG: 92/Downstream/956201

Upstream sequence

CTCTAAATAAAATAATGAAAACTGAAGACAGCACACATTTATGTGAAAATACACATACATAAGTCTCCAGATACTATAACCTAAATAAAAATACATTAAA

Downstream sequence

GTTATCGATAAAAATTATGGCTTAATTTTATGCAAATTAATGTAAAATATATCCCAGAGAAAACTAAAAGACCAGaaaaatatttttatattaataattG