Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10013213
Fusion event
HBV-F10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|
Start
1169
Orient
+
Integrated sequence
ATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCCGTTGCCCGGCAACGGCCA| |GGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTTCGGCTCCTCTGCCGATCC
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
End
113800799/113146485 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1267/Upstream/2805456; hsa-mir-4502/Downstream/116435;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/16097, chr13-CpG: 119/Downstream/6489
Upstream sequence
TTGGAGCTGCAGGCGGGGTTTTGGAGGGGTTCCTGGGCTGGGGGACCAGGGTGGGGCGCCCTGGAGGGCTCACTGGAGGGGCCCTCGCCCAGCCTGTTGA
Downstream sequence
GGTTTGCGATTCTTGTTTCCTGGTTCGAGTCTTGGCAAGTGGGCCTCATCTGCATCTTTAGGAAGAATGGTTGGTGTTCGTGTCTTAGAAAGCCTGACTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.