hsa-mir-6744-3p _LIHC.png
hsa-mir-130b-3p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10013223
Fusion event
HBV-chr17 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|Polymerase|
Start
1401
Orient
-
Integrated sequence
CGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACT| |GGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCG
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
End
44400507/46323141 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1180/Upstream/847706; hsa-mir-10226/Downstream/649876;
Upstream sequence
TCTGAGATTTATTTTTACTTAGTTGGTTCTTTAGGTTTGTTTTATTAttttcttaagtcaggttcattgaggtataattttcatatagtaacattcacgc
Downstream sequence
tttttaagtgtacagtttgatgagtctgacaaatgtatagttacataaccaccaccacattcccaatataaagcatttctgatgcctcaaaaaggcccct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate