Basic Information
VIS ID
TVIS10013236
Fusion event
HBV-chr19 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
468
Orient
-
Integrated sequence
TTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTG| |CCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTT
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4125849/4125852 (Hg38)
End
4125849/4125852 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1227/Upstream/164340; hsa-let-7e/Downstream/320126;
Nearest TSS
ENST00000633603/Upstream/1723; ENST00000598894/Downstream/27749;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1503, chr19-CpG: 29/Downstream/47304
Nearby gene
MAP2K2(-1723) ; CREB3L3(+27780) ;
Upstream sequence
gtctggccaacatggtgaaaccccgtctctactaaaacaaaaaaatacaaaaattagccgggcatggtggcgcgtgcctgtaatcccagctactcgcgag
Downstream sequence
gttgaggcagaagaattgcttgaacccgggaggcagaggttgcagtgagccaagatcacgccattgcactccagcttgggagacaagagcgagacttcgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate