VISDB Viral Integration Site DataBase

VIS ID

TVIS10013265

Fusion event

HBV-SLC25A20 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

332

Orient

+

Integrated sequence

TCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAA| |TCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATC

Chromosome

chr3

Cytoband

p21.31

Reference genome

Start

End

48932837/48895404 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7856-5p ; hsa-mir-3658 ; hsa-mir-501-5p ; hsa-mir-500a-5p ; hsa-mir-3156-5p

Nearest miRNA

hsa-mir-12127/Upstream/251124; hsa-let-7g/Downstream/124744;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/47431, chr3-CpG: 41/Downstream/3204

Upstream sequence

ttgcatcgatgttcatcagggatattggtctaaaattctctttttttgttgtgtctctgccaggctttggtatcaggatgatgctggtctcataaaatga

Downstream sequence

gtgggattacaggcgtgagccaccgcgcccagccCTTCCTGGATGTTTTTCctgctcactgttctgcttccaaatccttctcaaggttgctattatacta