VISDB Viral Integration Site DataBase

VIS ID

TVIS10013266

Fusion event

HBV-WDR82 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|Polymerase|

Start

1420

Orient

-

Integrated sequence

ACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTC| |CTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACC

Chromosome

chr3

Cytoband

p21.2

Reference genome

Start

End

52311496/52277480 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-30a-3p ; hsa-mir-92b-3p ; hsa-mir-17-5p ; hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-1207-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3910 ; hsa-mir-4302 ; hsa-mir-4711-5p ; hsa-mir-4747-5p ; hsa-mir-4763-3p ; hsa-mir-5094 ; hsa-mir-5196-5p ; hsa-mir-541-3p ; hsa-mir-605-3p ; hsa-mir-654-5p ; hsa-mir-6721-5p ; hsa-mir-6733-3p ; hsa-mir-6879-5p ; hsa-mir-9500 ; hsa-mir-129-5p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-3672 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-6864-3p ; hsa-mir-6885-3p ; hsa-mir-744-3p ; hsa-mir-8055

Nearest miRNA

hsa-let-7g/Upstream/9119; hsa-mir-12124/Downstream/16739;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/31356, chr3-CpG: 97/Downstream/573

Upstream sequence

tgccgggctttggtatcaagatgatgctggcctcataaaatgagttaggtaggattccctctttttctattatttggaatagtttcagaaggaatggtac

Downstream sequence

GCTCACATTCAGGTCAGGATGGGACGACCAAGTTCGTTTGTGTGTGGCAAAAAGGAAGTTTTAGATGTTGCTGAAAAGTTCACTTATGAACGTGGGCACC