VISDB Viral Integration Site DataBase

VIS ID

TVIS10013282

Fusion event

HBV-CLPTM1L integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1779

Orient

-

Integrated sequence

CAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGG| |AGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGC

Chromosome

chr5

Cytoband

p15.33

Reference genome

Start

End

1333643/1333528 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-22-3p ; hsa-mir-5093 ; hsa-mir-203a-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-3688-3p ; hsa-mir-4694-3p ; hsa-mir-6856-3p

Nearest miRNA

hsa-mir-4457/Upstream/24151; hsa-mir-10397/Downstream/177234;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/37673, chr5-CpG: 18/Downstream/1434

Upstream sequence

GCTATGTCACTTGAATCTCATGTGATCTATTTGTTATttttttattttttattatactttttaagttttagggtacatgtgcacaacgtgcaggttagtt

Downstream sequence

GAGGATAAGGGGGGACTACTGTATACACACCGGATGAGGATAAGGGGAGACTACTGTATACACACGGGATGAGGATGAGGGACTATTGTATACACACCAG