Basic Information
VIS ID
TVIS10013283
Fusion event
HBV-chr5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1802
Orient
-
Integrated sequence
GCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCT| |GCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGC
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
13358964/13358852 (Hg38)
End
13358964/13358852 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/2880707; hsa-mir-103a-1/Downstream/1467077;
Nearest TSS
ENST00000502646/Upstream/183006; ENST00000503244/Downstream/412430;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/563317, chr5-CpG: 26/Downstream/451165
Nearby gene
LINC01194(-553669) ; DNAH5(+331473) ;
Upstream sequence
CTTAATTTTAAAAAGTTTTGTTTTGTTCTTTTACAGGAAGAAAATCTGGAACTACTGACAATGTAATGATTAAAAATGTGGAGTTAAAGCTCAAGAGGAA
Downstream sequence
ccagaacctctccgccccaatttatctgtaagacagggatgataatagtccatgcttcatggtattatttgagagaatgaaGACAATTTACTTCTAATAA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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