Basic Information
VIS ID
TVIS10013303
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2745
Orient
+
Integrated sequence
CCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTAGACA| |CTATTTACACACTCTATGGAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTA
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
92829903/91817675 (Hg38)
End
92829903/91817675 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/612116; hsa-mir-10400/Downstream/1212076;
Nearest TSS
ENST00000518652/Upstream/460427; ENST00000522980/Downstream/89778;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/746918, chr8-CpG: 151/Downstream/284153
Nearby gene
SLC26A7(-419525) ; RUNX1T1(+137292) ;
Nearest cancer related gene
RUNX1T1(OG, +137292) ;
Upstream sequence
TGGTGTTGGGGAGAGGGTGGGAATTGCAAGCAGCTCACCTATTTCTAGAGCAGTGCAGGAGAGTCCCAGAATGGAACCAAAGGGATGCATGAAAAATGGC
Downstream sequence
tccatggcttcattcttgaagtcagtgagaccaagaacccaccaattccggacacaccgggtttaagcaattctcctgccctagcctccagagtggccag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate