Basic Information
VIS ID
TVIS10013320
Fusion event
HBV-IGK integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1825
Orient
-
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
89848733/89809923 (Hg38)
End
89848733/89809923 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2L
Target gene
IGK
Nearest miRNA
hsa-mir-1285-2/Upstream/997469; hsa-mir-10b/Downstream/6988355;
Nearest TSS
ENST00000437798/Upstream/479494; ENST00000429992/Downstream/41868;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/41822, chr2-CpG: 65/Downstream/428125
Nearby gene
MIR4436A(-736765) ; LSP1P4(+1975976) ;
Upstream sequence
atcattgaacggaaccgtaaggaatcatcatcaaatggaaccaaaaggagtcatcatcgaatggaattgcatggaatcatcatggaatggaatcgaatgg
Downstream sequence
aatcatcatcaaattgaatctaatggaatcatcgaatggaattgaatggaatcatcatcgaatgaattgaatggaaacatcgagtggtctccaatggaat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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