VISDB Viral Integration Site DataBase

VIS ID

TVIS10013351

Fusion event

HBV-FAIM2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

587

Orient

-

Integrated sequence

CAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGA| |CGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTG

Chromosome

chr12

Cytoband

q13.12

Reference genome

Start

End

50261731/49867948 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3152-5p ; hsa-mir-1231 ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-6836-3p ; hsa-mir-1299 ; hsa-mir-7977 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-3655 ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-4267

Nearest miRNA

hsa-mir-1244-3/Upstream/1095911; hsa-let-7i/Downstream/366194;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/24756, chr12-CpG: 48/Downstream/35849

Upstream sequence

TAGACTTTGGCCCTGACCCTGCTGCCTACACTGTGGTACCTGCCACCCCCCCTCAGGACCCAGAGTAGGAGGCTGCGGCATCTTCTGCCCGGCTTCCCCA

Downstream sequence

GCTCTGCAAAGAAGCCATTTCTCAAATGGCTGTGATGCGTGTGTGACACTGTTTATTGCCGAGGACCTGTCCCTCCTCCCCCAAGCTTTTGGCACTCAGC